PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C009873P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ZF-HD
Protein Properties Length: 299aa    MW: 31850.6 Da    PI: 8.4024
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C009873P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer112.22.7e-3560116358
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                     +v+YkeClkNhAaslGgha+DGCgEfmps++++ +++++lkCaACgCHRnFHRre++
  MELO3C009873P1  60 QVVYKECLKNHAASLGGHALDGCGEFMPSPTATaTDPTSLKCAACGCHRNFHRREPD 116
                     799****************************99999******************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.2E-2961115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-1961123IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.41863114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.5E-3263114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.18E-19191261IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-30194262IPR009057Homeodomain-like
TIGRFAMsTIGR015652.2E-26200257IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDLTPAISTA APTISTGGGA VKSPELDSET PIKIQPTTKS LPFTNGVLKR HHHIAPPPPQ  60
VVYKECLKNH AASLGGHALD GCGEFMPSPT ATATDPTSLK CAACGCHRNF HRREPDDPIA  120
TPTTTHVIEY QPHHRHHPPP PPTAAAAHRS PSSASPPPIS SSYYPSAPHM LLALSGVLPE  180
NAGSGGGFHH SIMTPSPNSR KRFRTKFTQN QKERMYEFAE KVGWKIQKRD EDMIQEFCSD  240
VGVDRGVLKV WMHNNKNTLG KKDGSRNMNG SGGEGDGDDK INGGGEPHAT ANGSSSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-221992581675ZF-HD homeobox family protein
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00387DAPTransfer from AT3G28920Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008443414.10.0PREDICTED: zinc-finger homeodomain protein 9-like
SwissprotQ9LHF01e-81ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBLA0A0A0LFA11e-178A0A0A0LFA1_CUCSA; Uncharacterized protein
STRINGVIT_14s0108g00750.t011e-94(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.11e-79homeobox protein 34